Location Analysis PCs: Altensteinstr. 23a (SupraFAB), offices 109, 112
For information about addtional Analysis PCs visit the OM wiki page: OM-Analysis PCs
Details:
We have three analysis workstations (BioAnalysis PC1, PC2 & PC3) for analyzing data obtained in the Biolabs of the Bioanalytic unit.
Do not store data on the workstation hard drives but use the BCP-storage network drives instead! Remeber that the use of USB sticks and hard drives s well as other devices is forbidden.
The workstations BioAnalysis PC1, PC2 & PC3 are equipped with Microsoft Office Suite, Adobe Acrobat, Affinity Suite (similar to photoshop), Origin, Mestre Niva, MatLab, Stata, JMP statistics, R, Endnote, Box.FU, Webex, Fiji (ImageJ), Zeiss, Zen blue, LAS X, FlowJo (License Dongle need to be booked separately), Graph Pad Prism (planned, not available now), Imspector (planned, not available now) and are administrated by the zedat and you can log in with your zedat account.
Booking:
Analysis PCs have to be booked via OpenIRIS (use and registration see here).
BioAnalysis PC1: https://fub.openiris.io/timeline/4d5e4360-7504-4cb6-b408-09def5690580
BioAnalysis PC2: https://fub.openiris.io/timeline/507913b7-720b-4ce3-9582-d74d0de2366d
BioAnalysis PC3: cannot be used & booked currently (https://fub.openiris.io/timeline/94fdc245-9d38-4ea9-9793-7a0abfa28519)
FlowJo Software License-Dongle: https://fub.openiris.io/timeline/b24cf01b-6dd3-4846-8d7f-b9c69739f87e
Software:
University-wide licensed software packages and standard solutions for editing, video production, literature management, scientific work such asAdobe Acrobat, MS Office, EndNote, MATLAB, Mestrenova or Stata can be selected and installed on the software page of ZEDAT.
Software packages with licenses restricted to the BCP department such as ChemDraw, CambridgeStructuralDatabase CSD or OriginPro can be selected and installed on the BCP IT page.
Additional software for internal use only is avaible here:
- FlowJo can be used to analyse flow cytometry data, the FlowJo Software License-Dongle can be booked via OpenIRIS (use and registration see here): https://fub.openiris.io/timeline/b24cf01b-6dd3-4846-8d7f-b9c69739f87e.
- Fiji is an image processing package - a “batteries-included” distribution of ImageJ2, bundling a lot of plugins which facilitate scientific image analysis. Tutorials from the OM facility for using Fiji are available here: Image Analysis with Fiji.
- Leica LAS X is the software platform for all Leica microscopes: It integrates confocal, widefield, stereo, super-resolution, and light-sheet instruments from Leica Microsystems.
- Imspector is the software from the Abberior STED micrscope.
- Zen lite is the Zeis micrpscope software.
- BioRender is a web application that can be used to create scientific figures, diagrams, and illustrations from a scientifically accurate image library but you need a license for full access (if ou do not have a license, ask in your lab mates, who is the license holder for the lab).
- CFX Maestro 2.2 is the software of the BioRAD qPCR cycler.
- Image Lab is the software for the BioRAD gel documentation system.
- MO.Affinity and MO.Control is the software to operate the MST devices and to analyze MST data.
- RTCA is the software for the real time cell analyzer (RTCA).
- Origin is the software to analyse and fit data. Follow the protocol for the home use license of the physics department with the exception that you have to retreive the license key not by logging in to the physics departmnment but to the BCP department. To do so, install the software putty (https://www.chiark.greenend.org.uk/~sgtatham/putty/latest.html), open the software after installing it and copy in the first empty line (Host Name or IP address) <login.bcp.fu-berlin.de>and press enter. In the new opening black window, write your zedat name and press enter. Then write your zedat name in the next line and press enter. Then in the next line type <show-origin-license-key> and press eneter. Confirm with <Y> for yes and the liecense key will be shown. Then continue with the protocol from the physics department using the license key obtained.
In case you have a zedat adminbtred computer, contact Holger Gand (BCP IT admin). - ChemDraw is a draing program for chemical structures.
- Cambridge Structural Database the Comprehensive Repository of Validated and Curated Small Molecule Organic and Metal-organic Crystal Structures.
- MesTrenova is used to analyse NMR data.
