On this page you will find an overview of basic image analysis methods using ImageJ or Fiji. The focus here is on the quantification of various microscopy images. This includes the detection and counting of cells with and without labeling, as well as other functions like the colocalization of different color channels. Below is a list with some tutorial videos regarding the most basic and important image analysis steps with Fiji.
Click on the image to start the tutorial 
Additional information can be found here:
- https://imagej.nih.gov/ij/docs/guide/146-1.html#toc-Section-1
- https://imagej.nih.gov/ij/docs/guide/146-Part-IV.html#sub:Toolbar
- The ImageJ / Fiji website can be found here: https://imagej.net/
- The original publication of ImageJ can be found here: https://www.nature.com/articles/nmeth.2089
- The original publication of Fiji can be found here: https://www.nature.com/articles/nmeth.2019
